anovaLike.Rd
This function executes in a docker edgeR for the identification of differentially expressed genes in bulk RNAseq. IMPORTANT the filename shoould not have any '.' in the name unless .txt
anovaLike( group = c("sudo", "docker"), file, logFC.threshold = 1, FDR.threshold, logCPM.threshold = 4, plot = c(TRUE, FALSE) )
group, | a character string. Two options: sudo or docker, depending to which group the user belongs |
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file, | a character string indicating the path of the file, with counts.table name and extension included |
logFC.threshold, | minimal logFC present in at least one of the comparisons with respect to reference covariate |
FDR.threshold, | minimal FDR present in at least one of the comparisons with respect to reference covariate |
logCPM.threshold, | minimal average abundance |
plot, | TRUE if differentially expressed genes are represented in a plot. |