Running circRNA prediction overlap

This function executes the docker container docker4circ to overlap circRNA predictions obtained from multiple tools

circrnaOverlapResults(
  group = c("sudo", "docker"),
  scratch.folder,
  input.folder,
  output.folder,
  min_support
)

Arguments

group,

a character string. Two options: "sudo" or "docker", depending to which group the user belongs

scratch.folder,

a character string indicating the scratch folder where docker container will be mounted

input.folder,

string indicating the path of the folder containing the samples to overlap

output.folder,

string indicating the path of the output folder

min_support,

an integer representing the minimum number of algorithms detecting the circRNA.

Value

The list of circRNAs detected in at least the user-defined number of algorithms

Author

Nicola Licheri

Examples

if (FALSE) {
}