circrnaReformat.Rd
This function executes the docker container docker4circ to reformat circRNA prediction file produced by a certain tool in a common format to further analysis.
circrnaReformat( group = c("sudo", "docker"), scratch.folder, input.folder, output.folder, tool = c("acfs", "circexplorer", "circexplorer2", "circrnafinder", "ciri", "ciri2", "dcc", "findcirc2", "knife", "starchip", "uroborus") )
group, | a character string. Two options: |
---|---|
scratch.folder, | a character string indicating the scratch folder where docker container will be mounted |
input.folder, | string indicating the path of the folder which contains the input files to be reformatted |
output.folder, | string indicating the path to the reformatted circRNA prediction files |
tool, | string indicating the tool used to create the input files. Supported tools are: acfs, circexplorer, circexplorer2, circrnafinder, ciri, ciri2, dcc, findcirc2, knife, starchip, uroborus |
A circRNA list reformatted in a tab-delimited file storing the circRNA genomic coordinates
if (FALSE) { }