deeptoolBwig.Rd
This function executes the docker container bowtie2 embedding deeptools the output of bowtie2 sorted.bam is used to generate the bigWig
deeptoolBwig( group = c("sudo", "docker"), fastq.folder = getwd(), scratch.folder = "/data/scratch", threads )
group, | a character string. Two options: |
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fastq.folder, | a character string indicating where bam, bai files are located |
scratch.folder, | a character string indicating the scratch folder where docker container will be mounted |
threads, | a number indicating the number of cores to be used from the application |
sorted.bw