fastqc.Rd
This function executes a ubuntu docker that produces as output FASTQCstdin_fastqc.html and stdin_fastqc.zip files
fastqc(group = c("sudo", "docker"), data.folder, large = FALSE)
group, | a character string. Two options: sudo or docker, depending to which group the user belongs |
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data.folder, | a character string indicating the folder where input data are located and where output will be written |
large, | boolenan if FALSE uses 10000 reads to make fastq statistics if TRUe uses 1 milion reads |