heatmaply.Rd
This function generates an heatmap using a count table and a specific gene list
heatmaply( group = c("docker", "sudo"), scratch.folder, count.table, gene.list, output.folder, separator = c("TAB", "COMMA", "SPACE"), status = c("raw", "log"), color.palette = c("viridis", "BrBG", "magma", "plasma", "cividis") )
group, | a character string. Two options: |
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scratch.folder, | a character string indicating the scratch folder where docker container will be mounted |
count.table, | a character string indicating the path of the counts table file |
gene.list, | a character string indicating the path of the file containing the genes to include in the heatmap |
output.folder, | a character string indicating the path of the output folder |
separator, | a character string indicating the separator character in the count table. Allowed characters are TAB, COMMA and SPACE |
status, | a character string, 'raw' if the data are raw counts, 'log' otherwise |
color.palette, | a string indicating the color palette to be used in the heatmap. Available palettes are Viridis, BrBG, magma, plasma and cividis |
A html file containing the interactive heatmap produced using plot.ly
if (FALSE) { }