Function to produce an interactive heatmap using plot.ly

This function generates an heatmap using a count table and a specific gene list

heatmaply(
  group = c("docker", "sudo"),
  scratch.folder,
  count.table,
  gene.list,
  output.folder,
  separator = c("TAB", "COMMA", "SPACE"),
  status = c("raw", "log"),
  color.palette = c("viridis", "BrBG", "magma", "plasma", "cividis")
)

Arguments

group,

a character string. Two options: "sudo" or "docker", depending to which group the user belongs

scratch.folder,

a character string indicating the scratch folder where docker container will be mounted

count.table,

a character string indicating the path of the counts table file

gene.list,

a character string indicating the path of the file containing the genes to include in the heatmap

output.folder,

a character string indicating the path of the output folder

separator,

a character string indicating the separator character in the count table. Allowed characters are TAB, COMMA and SPACE

status,

a character string, 'raw' if the data are raw counts, 'log' otherwise

color.palette,

a string indicating the color palette to be used in the heatmap. Available palettes are Viridis, BrBG, magma, plasma and cividis

Value

A html file containing the interactive heatmap produced using plot.ly

Author

Nicola Licheri, nicola [dot] licheri [at] unito [dot] it, University of Turin

Examples

if (FALSE) {

}