A function to handle a docker containier executing MultiQC

This function executes MultiQC docker (Ewels et al., 2016. Bioinformatics. 32(19):3047-8) returning the multiqc_report.html file and the content of multiqc_data/ folder

multiQC(group = c("sudo", "docker"), data.folder)

Arguments

group,

a character string. Two options: sudo or docker, depending to which group the user belongs
data.folder,

a character string indicating the folder where input data are located and where output will be written

Examples

if (FALSE) {
    #running skeleton
    multiQC(group="docker", data.folder=getwd())
}