rsemBw.Rd
This function executes the docker container rsemstar where RSEM is installed and create a bigwig file for genomic data visualization
rsemBw( group = c("sudo", "docker"), bam.folder = getwd(), scratch.folder = "/data/scratch" )
group, | a character string. Two options: |
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bam.folder, | a character string indicating where BAM SORTED file is located |
scratch.folder, | a character string indicating the scratch folder where docker container will be mounted |
output.bw, which is the bigwig
if (FALSE) { #downloading fastq files rsemBw(group="docker",bam.folder=getwd(), scratch.folder="/data/scratch") }