sraDownload.Rd
This function executes a ubuntu docker that produces as output FASTQCstdin_fastqc.html and stdin_fastqc.zip files
sraDownload( group = c("sudo", "docker"), sra.name, data.folder, scratch.folder, threads = 8 )
group, | a character string. Two options: sudo or docker, depending to which group the user belongs |
---|---|
sra.name, | a character string indicating the name of the SRA object to be download |
data.folder, | a character string indicating the working folder where output folder will be written |
scratch.folder, | a character string indicating the temporary folder for data preprocessing |
threads, | a integer indicating the number of threads to be used from fasterq-dumper |