starChipIndex.Rd
This function prepare the genome bed file for starchip, the GTF must be the one used by starChimeric
starChipIndex(group = c("sudo", "docker"), genome.folder = getwd())
group, | a character string. Two options: sudo or docker, depending to which group the user belongs |
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genome.folder, | a character string indicating the folder where the indexed reference genome for STAR is located. |
the bed files of the reference genome for STARChip analysis
if (FALSE) { starChipIndex(group="docker", genome.folder="/data/genomes/hg38star") }