This function executes a set of scripts to check if SeqBox installation is OK. It requests the existence of the following folders: /data/genomes, /data/scratch, /data/tests. /data/genomes folder must contain the following folders: hg38star mm10bwa mm10star



testSeqBox.out file containing the results of the tests


if (FALSE) { #downloading in /data/genomes setwd("/data/genomes") system("wget") system("wget") system("wget") system("wget") system("gzip -d *.gz") system("tar xvf *.tar") setwd("/data/") system("wget") system("gzip -d tests.tar.gz") system("tar xvf tests.tar") system("rm tests.tar") #running test SeqBox library(docker4seq) testSeqbox() }