Feature selection for autoencoder — autoFeature • rCASC

This function extract feature selection for each clusters.

autoFeature(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  separator,
  nCluster,
  projectName
)

Arguments

group,	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder,	a character string indicating the path of the scratch folder
file,	a character string indicating the path of the file, with file name and extension included.Has to be the one in the projectName folder.Different so from the previous one.
separator,	separator used in count file, e.g. '\t', ','
nCluster,	number of cluster in which the dataset is divided
projectName,	might be different from the matrixname in order to perform different analysis on the same dataset

Value

Author

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

if (FALSE) {
 autoFeature(group="docker", scratch.folder="/home/user/Riccardo/Riccardo/1_inDocker_2/scratch", file="/home/user/Riccardo/Riccardo/1_inDocker_2/data/Results/testDocker/setA.csv",separator=",", nCluster=5, projectName="testDocker")
}