bulkClusters

The present function create pseudo-bulk matrix from clustering.output file. The output are three files: _bulklog2, which is not normalized, _bulkColumn, which is z-scoere calculated over each column, _bulkRow, which is z-score calculated over each row

bulkClusters(group = c("sudo", "docker"), scratch.folder, file, separator, cl)

Arguments

group,

a character string. Two options: sudo or docker, depending to which group the user belongs

scratch.folder,

a character string indicating the path of the scratch folder

file,

a character string indicating the path of the file, with file name and extension included

separator,

matrix separator, ',', '\t'

cl,

name and path of the file clustering.output previously generated from clustering algorithm from rcasc

Author

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

if (FALSE) {
 bulkClusters(group="docker", scratch.folder="/home/user/scratch", 
 file="/home/user/temp/setA.csv",separator=",",
 cl="/home/user/temp/Results/setA/3/setA_clustering.output.csv")
 
}