This function executes a ubuntu docker for cometsc (https://github.com/MSingerLab/COMETSC)

cometsc(
group = c("sudo", "docker"),
file,
scratch.folder,
X = 0.15,
K = 2,
counts = c("True", "False"),
skipvis = c("True", "False"),
nCluster,
separator
)

## Arguments

group, a character string. Two options: sudo or docker, depending to which group the user belongs a character string indicating the path of the file, with file name and extension included temporary folder where calculation is made integer refering to the max number of process run in parallel default 1 max the number of clusters under analysis, i.e. nCluster from 0 to 1 argument for XL-mHG default 0.15, for more info see cometsc help. the number of gene combinations to be considered., possible values 2, 3, 4, default 2. WARNING increasing the number of combinations makes the matrices very big if set to True it will graph the log(expression+1). To be used if unlogged data are provided set to True to skip visualizations number of interested cluster used for analysis separator used in count file, e.g. '\t', ','

## Author

Raffaele Calogero,raffaele.calogero [at] unito [dot] it, University of Torino

## Examples

if (FALSE) {
#running cometsc
cometsc(group="docker", file="/Users/raffaelecalogero/Desktop/AXLN1/data/topx_veanno.csv",
scratch.folder="/Users/raffaelecalogero/Desktop",