A function to convert raw count in log counts

This function convert raw counts in log format

counts2log(file, log.base = c(2, 10))

Arguments

file,

a character string indicating the path of the file. IMPORTANT: full path to the file MUST be included.

log.base,

the base of the log to be used for the transformation

Value

log transformed table

Author

Raffaele Calogero, raffaele.calogero [at] unito [dot] it, University of Torino

Examples

if (FALSE) {
    system("wget http://130.192.119.59/public/TO BE INSERTED")
    #running skeleton
    counts2log(file=paste(getwd(), "example_UMI.txt", sep="/"), log.base=10)
}