csvToSparse.Rd
This function executes a ubuntu docker that create a sparse matrix, without 0s, from a dense one, including 0s
csvToSparse(group = c("sudo", "docker"), scratch.folder, file, separator)
group, | a character string. Two options: sudo or docker, depending to which group the user belongs |
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scratch.folder, | a character string indicating the path of the scratch folder |
file, | a character string indicating the path of the file, with file name and extension included |
separator, | separator used in count file, e.g. '\t', ',' |
three files: matrix.mtx, barcodes.tsv and genes.tsv
Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino