This function filter matrix raw count

deltaFilter(
  threshold,
  minDelta,
  minNGene,
  original,
  menoRibo,
  separator,
  format,
  wf
)

Arguments

threshold,

value to estimate if a gene is significatively expressed

minDelta,

filtering value for the minimun difference value between genes WMT&rib and genes without MT and without RB

minNGene,

filtering value for the minimun number of gene

original,

matrix name without annotation

menoRibo,

matrix name with annotation

separator,

matrix separator value

format,

matrix format

wf,

if this parameter is setted to 0 your filtering will be minDelta and minNGene based, otherwise it will take the top wf cells with the higher number of genes significatively expressed

Value

filtered matrix table

Author

Luca Alessandri, alessandri.luca [at] gmail [dot] com, University of Torino

Examples