This function create a plot in which genes are plotted with respect to total counts UMI for each cell.

genesUmi(file, umiXgene = 3, sep)

Arguments

file,

a character string indicating the path of the file tab delimited of cells un-normalized expression counts.

umiXgene,

a integer defining how many UMI are required to call a gene as present. default: 3

sep,

separator used in count file, e.g. '\t', ','

Value

pdf with the cells counts distributions: genes.umi.pdf

Examples

if (FALSE) { system("wget http://130.192.119.59/public/testSCumi_mm10.csv.zip") unzip("testSCumi_mm10.csv.zip") genesUmi(file=paste(getwd(),"testSCumi_mm10.csv",sep="/"), umiXgene=3, sep=",") }