Permutation Movie

This function executes a ubuntu docker that create a video showing the cluster changing of all the cells

permutationMovie(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  nCluster,
  separator,
  framePP,
  permutationNumber
)

Arguments

group,

a character string. Two options: sudo or docker, depending to which group the user belongs

scratch.folder,

a character string indicating the path of the scratch folder

file,

a character string indicating the path of the file, with file name and extension included

nCluster,

cluster folder generated by simlBootstrap or tsneBootstrap to be analysed

separator,

separator used in count file, e.g. '\t', ','

framePP,

Number of frame for each permutation

permutationNumber,

Number of random permutation,have to be less or the same then the total permutation

Value

Csv file with correct cluster name

Author

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

if (FALSE) {
 permutationMovie("docker","/home/lucastormreig/CASC5.0/5_permutationMovie/scratch/",file,7,",",200,5)#
}