Saver

This function performs Data normalization and prediction with SAVER

saver(group = c("sudo", "docker"), scratch.folder, file, separator, ncores)

Arguments

group,

a character string. Two options: sudo or docker, depending to which group the user belongs

scratch.folder,

a character string indicating the path of the scratch folder

file,

a character string indicating the path of the file, with file name and extension included. The file must contain library normalized cells, log transformed counts, and scaled genes

separator,

separator used in count file, e.g. '\t', ','

ncores,

number of cores to use

Value

predicted matrix

Author

Luca Alessandri , alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

if (FALSE) {
saver(group=c("sudo"), scratch.folder="/home/user/saver/inDocker/scratch/", file="/home/user/saver/inDocker/data/setA.csv",separator=",",ncores=16)
}