slogosR — slogosR • rCASC

This function creates slogs plot on the basis of the output of gibbsR function

slogosR(
  group = c("sudo", "docker"),
  scratch.folder,
  gibbsCoresPath,
  resFolderCustom = "NULL"
)

Arguments

group,: a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder,: a character string indicating the path of the scratch folder
gibbsCoresPath,: Path to the cores folder that is generated as part of the results of gibbsR function.
resFolderCustom,: optional parameter. Default will store the results in fastqPath otherwise will store the results in resFolderCustom path.

Value

an indexed genome compliant with 10XGenomics cellranger

Author

Luca Alessandrì

Examples

if (FALSE) {
library(rCASC)
dir.create("scratch")
scratch.folder=paste(getwd(),"scratch",sep="/")
gibbsCoresPath=paste(getwd(),"fastq",sep="/")
resFolder=paste(getwd(),"resFolder",sep="/")
dir.create(resFolder)
newFolder=paste(results,"res",list.files(paste(results,"res",sep="/")),"cores",sep="/")
slogosR(group="docker",scratch.folder,newFolder,resFolderCustom=newFolder)
}