This function executes a ubuntu docker that subset a matrix

subSetCell(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  separator,
  cells.number
)

Arguments

group,

a character string. Two options: sudo or docker, depending to which group the user belongs

scratch.folder,

a character string indicating the path of the scratch folder

file,

a character string indicating the path of the file, with file name and extension included

separator,

separator used in count file, e.g. '\t', ','

cells.number,

number of cells to be extracted

Value

subsetted matrix

Examples