umap

This function executes a ubuntu docker that performs umap visualization

umap(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  separator,
  seed,
  epochs
)

Arguments

group,

a character string. Two options: sudo or docker, depending to which group the user belongs

scratch.folder,

a character string indicating the path of the scratch folder

file,

a character string indicating the path of the count matrix

separator,

separator used in count file, e.g. '\t', ','

seed,

number for reproducibility

epochs,

number of epochs for umap

Value

plot

Author

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

if (FALSE) {
dir.create("scratch")
umap(group=c("sudo"), scratch.folder=paste(getwd(),"/scratch",sep=""), file=paste(getwd(),"/setA.csv",sep=""),separator=",",seed=111,epochs=1000)
}