This function is a wrapper for SCnorm: robust normalization of single-cell RNA-seq data (Bacher et al. Nature Methods 2017, 14:584–586)
a character string. Two options: sudo or docker, depending to which group the user belongs
a character string indicating the path of the file. IMPORTANT: full path to the file MUST be included. Only tab delimited files are supported
specify the path and/or name of output files.
a string identifying the normalization method: CLR_FN, DESEQ_FN, FQ_FN, SCRAN_FN, SUM_FN, TMM_FN, UQ_FN, more info on the vignette.
a tab delimited file containing the normalized data.